BICF Pipelining

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Create and maintain single-cell RNA-sequencing analytic pipelines which are compatible with UT Southwestern’s HPC (BioHPC) web-based workflow submission system Astrocyte. They are written to be interoperable and can be run on any system (including cloud infrastructure) with few requirements and limited config file modifications. Also, collaborate on a variety of other analytic modalities, such as (but not limited to) CHIP-seq, and Methyl-seq.


  • Senior pipeline developer
    • Lead developer on single-cell RNA-seq pipelines
    • Collaborator on other core pipelines